Package: tidyCDISC 0.2.1
tidyCDISC: Quick Table Generation & Exploratory Analyses on ADaM-Ish Datasets
Provides users a quick exploratory dive into common visualizations without writing a single line of code given the users data follows the Analysis Data Model (ADaM) standards put forth by the Clinical Data Interchange Standards Consortium (CDISC) <https://www.cdisc.org>. Prominent modules/ features of the application are the Table Generator, Population Explorer, and the Individual Explorer. The Table Generator allows users to drag and drop variables and desired statistics (frequencies, means, ANOVA, t-test, and other summary statistics) into bins that automagically create stunning tables with validated information. The Population Explorer offers various plots to visualize general trends in the population from various vantage points. Plot modules currently include scatter plot, spaghetti plot, box plot, histogram, means plot, and bar plot. Each plot type allows the user to plot uploaded variables against one another, and dissect the population by filtering out certain subjects. Last, the Individual Explorer establishes a cohesive patient narrative, allowing the user to interact with patient metrics (params) by visit or plotting important patient events on a timeline. All modules allow for concise filtering & downloading bulk outputs into html or pdf formats to save for later.
Authors:
tidyCDISC_0.2.1.tar.gz
tidyCDISC_0.2.1.zip(r-4.5)tidyCDISC_0.2.1.zip(r-4.4)tidyCDISC_0.2.1.zip(r-4.3)
tidyCDISC_0.2.1.tgz(r-4.4-any)tidyCDISC_0.2.1.tgz(r-4.3-any)
tidyCDISC_0.2.1.tar.gz(r-4.5-noble)tidyCDISC_0.2.1.tar.gz(r-4.4-noble)
tidyCDISC_0.2.1.tgz(r-4.4-emscripten)tidyCDISC_0.2.1.tgz(r-4.3-emscripten)
tidyCDISC.pdf |tidyCDISC.html✨
tidyCDISC/json (API)
NEWS
# Install 'tidyCDISC' in R: |
install.packages('tidyCDISC', repos = c('https://biogen-inc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/biogen-inc/tidycdisc/issues
- adae - ADAE
- adlbc - ADLBC
- adsl - ADSL
- adtte - ADTTE
- advs - ADVS
- example_dat1 - Example Data Set 1
- example_dat2 - Example Data Set 2
Last updated 2 years agofrom:f41ed77e1f. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 12 2024 |
R-4.5-win | OK | Oct 12 2024 |
R-4.5-linux | OK | Oct 12 2024 |
R-4.4-win | OK | Oct 12 2024 |
R-4.4-mac | OK | Oct 12 2024 |
R-4.3-win | OK | Oct 12 2024 |
R-4.3-mac | OK | Oct 12 2024 |
Exports:app_methodscol_for_list_exprcommon_rownamesdata_to_filterdata_to_use_strget_levelsprep_adaeprep_adslprep_bdspretty_IDsrun_appstd_footnotetg_gtvarN_fctr_reorder
Dependencies:askpassassertthatattemptbase64encbigDbitbit64bitopsbslibcachemciceroneclicliprcolorspacecommonmarkconfigcpp11crayoncrosstalkcurldata.tabledatawizarddigestdplyrDTevaluatefansifarverfastmapfontawesomeforcatsfsgenericsGGallyggcorrplotggplot2ggstatsgluegolemgtgtablehavenherehighrhmshtmltoolshtmlwidgetshttpuvhttrIDEAFilterinsightisobandjquerylibjsonlitejuicyjuiceknitrlabelinglaterlatticelazyevallifecyclemagrittrmarkdownMASSMatrixmemoisemgcvmimemunsellnlmeopensslpatchworkpillarpkgconfigplotlyplyrprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppreactablereactRreadrreshape2rlangrmarkdownrprojrootsassscalesshinyshinyjsshinyTimeshinyWidgetssjlabelledsourcetoolsstringistringrsurvivalsystibbletidyrtidyselecttimevistinytextippytzdbutf8V8vctrsviridisLitevroomwithrxfunxml2xtableyaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
ADAE | adae |
ADLBC | adlbc |
ADSL | adsl |
ADTTE | adtte |
ADVS | advs |
Find the proper function to apply to each statistical and column block pairing and use the metadata associated with each column block for the function's arguments | app_methods |
GT Column Names | col_for_list_expr |
Identify Names of Columns | common_rownames |
The smallest possible data set we could filter to semi-join later | data_to_filter |
Function to clean and combine ADAE dataset with ADSL | data_to_use_str |
Example Data Set 1 | example_dat1 |
Example Data Set 2 | example_dat2 |
Get Factor Levels | get_levels |
Function to pre-filter the ADAE depending on the stan table selected | prep_adae |
Function to pre-filter the ADSL depending on the stan table selected | prep_adsl |
Combine BDS Data Frames | prep_bds |
Create Pretty IDs for TG Table | pretty_IDs |
Run the Shiny Application | run_app |
Create Standard Footnotes for TG Table | std_footnote |
Prepare the table generator data for output | tg_gt |
Re-order Factor Levels by VARN | varN_fctr_reorder |